Rna Seq
Physiological analysis and transcriptome comparison of two muskmelon (Cucumis melo L.) cultivars in response to salt stress
Authors: L.M. Wang, L.D. Zhang, J.B. Chen, D.F. Huang and Y.D. Zhang
Melon (Cucumis melo L.) is an important vegetable crop that ranks second in salt tolerance among the Cucurbitaceae. Previous studies on the two muskmelon cultivars ‘Bing XueCui’ (BXC) and ‘Yu Lu’ (YL) revealed that they had different characteristics under salt stress, but the molecular basis underlying their different physiological.. Read More»
- Genet. Mol. Res. 15(3):
- gmr.15038738
- DOI:
- 10.4238/gmr.15038738
Characterization and development of 56 EST-SSR markers derived from the transcriptome of Odontobutis potamophila
Authors: P.P. Wang, M. Ren, S.Q. Chen, S.W. Yin, C. Zhao, H.Y. Zhang, X.R. Li, Q.Q. Cao and G.Q. Zhou
Expressed sequence tags (ETSs) are the sources of microsatellite development. In this study, we isolated and characterized microsatellite markers for Odontobutis potamophila by using Illumina RNA-sequencing. We sequenced a large number of ESTs and screened 200 potential microsatellites. Consequen.. Read More»
- Genet. Mol. Res. 16(2):
- gmr16029129
- DOI:
- 10.4238/gmr16029129
E2F, HSF2, and miR-26 in thyroid carcinoma: bioinformatic analysis of RNA-sequencing data
Authors: J.C. Lu and Y.P. Zhang
In this study, we examined the molecular mechanism of thyroid carcinoma (THCA) using bioinformatics. RNA-sequencing data of THCA (N = 498) and normal thyroid tissue (N = 59) were downloaded from The Cancer Genome Atlas. Next, gene expression levels were calculated using the TCC package and differentially expressed genes (DEGs) were identified using the ed.. Read More»
- Genet. Mol. Res. 15(1):
- gmr.15017576
- DOI:
- 10.4238/gmr.15017576
De novo assembly and characterization of skin transcriptome using RNAseq in sheep (Ovis aries)
Authors: Y.J. Yue, J.B. Liu, M. Yang, J.L. Han, T.T. Guo, J. Guo, R.L. Feng and B.H. Yang
Wool is produced via synthetic processes of wool follicles, which are embedded in the skin of sheep. The development of new-generation sequencing and RNA sequencing provides new approaches that may elucidate the molecular regulation mechanism of wool follicle development and facilitate enhanced selection for wool traits through gene-assisted selection or .. Read More»
- Genet. Mol. Res. 14(1):
- 2015.February.13.16
- DOI:
- 10.4238/2015.February.13.16
Low metallothionein 1M expression association with poor hepatocellular carcinoma prognosis after curative resection
Authors: J. Ding and S.C. Lu
According to the typical clinical characteristics of hepatocellular carcinoma (HCC), recurrence and prognosis can differ dramatically between patients. Using RNA sequencing, we identified differential expression of the gene metallothionein 1M (MT1M) by comparing early-recurrence HCC (N = 11), no-recurrence HCC (N = 10), and no.. Read More»
- Genet. Mol. Res. 15(4):
- gmr.15048735
- DOI:
- 10.4238/gmr.15048735
Gynophore miRNA analysis at different developmental stages in Arachis duranensis
Authors: Y. Shen, Y.H. Liu, X.J. Zhang, Q. Sha and Z.D. Chen
Peanut is one of the most important oilseed crops in the world that provides a significant amount of lipids and protein for many people. The gynophore plays an important role in gynophore development after fertilization of the peanut ovule. MicroRNAs (miRNAs) play an important role in numerous developmental and physiological p.. Read More»
- Genet. Mol. Res. 15(4):
- gmr15048691
- DOI:
- 10.4238/gmr15048691
miRQuest: integration of tools on a Web server for microRNA research
Authors: R.R. Aguiar, L.A. Ambrosio, G. Sep�?ºlveda-Hermosilla, V. Maracaja-Coutinho and A.R. Paschoal
This report describes the miRQuest - a novel middleware available in a Web server that allows the end user to do the miRNA research in a user-friendly way. It is known that there are many prediction tools for microRNA (miRNA) identification that use different programming languages and methods to realize this task. It is diffic.. Read More»
- Genet. Mol. Res. 15(1):
- gmr.15016861
- DOI:
- 10.4238/gmr.15016861